plotindi {iCNV} | R Documentation |
Plot relationship between platforms and features for each individual. Only work for muli-platform inference.
plotindi(ngs_plr, snp_lrr, ngs_baf, snp_baf, ngs_plr.pos, snp_lrr.pos, ngs_baf.pos, snp_baf.pos, icnvres, I = numeric(), h = NULL, t = NULL)
ngs_plr |
A list of NGS intensity data. Each entry is an individual. If no NGS data, no need to specify. |
snp_lrr |
A list of SNP array intensity data. Each entry is an individual. If no SNP array data, no need to specify. |
ngs_baf |
A list of NGS BAF data. Each entry is an individual. If no NGS data, no need to specify. |
snp_baf |
A list of SNP array BAF data. Each entry is an individual. If no SNP array data, no need to specify. |
ngs_plr.pos |
A list of NGS intensity postion data. Each entry is an individual with dimension= (#of bins or exons, 2(start and end position)). If no NGS data, no need to specify. |
snp_lrr.pos |
A list of SNP array intensity postion data. Each entry is an individual with length=#of SNPs. If no SNP array data, no need to specify. |
ngs_baf.pos |
A list of NGS BAF postion data. Each entry is an individual with length=#of BAFs. If no NGS data, no need to specify. |
snp_baf.pos |
A list of SNP array BAF postion data. Each entry is an individual with length=#of BAFs. If no SNP array data, no need to specify. |
icnvres |
CNV inference result. The output from iCNV_detection() |
I |
Indicating the position of the individual to plot. Type integer. |
h |
start position of this plot. Default Start of the whole chromosome |
t |
end position of this plot. Default End of the whole chromosome |
void
plotindi(ngs_plr,snp_lrr,ngs_baf,snp_baf, ngs_plr.pos,snp_lrr.pos,ngs_baf.pos,snp_baf.pos, icnv_res0,I=1)