.dots_plot {hypeR}R Documentation

Plot top enriched genesets

Description

Plot top enriched genesets

Usage

.dots_plot(
  hyp_df,
  top = 20,
  abrv = 50,
  sizes = TRUE,
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  title = ""
)

Arguments

hyp_df

A dataframe from a hyp object

top

Limit number of genesets shown

abrv

Abbreviation length of genesetlabels

sizes

Size dots by geneset sizes

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value e.g. c("fdr", "pval")

title

Plot title

Value

A ggplot object


[Package hypeR version 1.9.1 Index]