orderBy {genomation}R Documentation

Reorder all elements of a ScoreMatrixList to a given ordering vector

Description

Reorder all elements of a ScoreMatrixList to a given ordering vector

Usage

orderBy(sml, ord.vec)

## S4 method for signature 'ScoreMatrixList'
orderBy(sml, ord.vec)

Arguments

sml

ScoreMatrixList object

ord.vec

an integer vector

Value

ScoreMatrixList object

Examples

library(GenomicRanges)
data(cage)
data(cpgi)
data(promoters)

cage$tpm = NULL
targets = GRangesList(cage=cage, cpgi=cpgi)
sml = ScoreMatrixList(targets, promoters, bin.num=10)
kmeans.clust = kmeans(sml$cage,3)
 
sml.ordered = orderBy(sml, kmeans.clust$cluster)

multiHeatMatrix(sml.ordered)


[Package genomation version 1.25.0 Index]