linePlot {geneXtendeR}R Documentation

Produces line plots.

Description

Makes differential line plots showing the differences in the number of genes under peaks at consecutive upstream extension levels.

Usage

linePlot(organism, start, end, by)

Arguments

organism

Object name assigned from readGFF() command.

start

Lower bound of upstream extension.

end

Upper bound of upstream extension.

by

Interval between consecutive extensions.

Value

Creates differential line plots.

Examples

library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
linePlot(rat, 1000, 3000, 100)



[Package geneXtendeR version 1.19.0 Index]