getRanking-methods {geNetClassifier} | R Documentation |
Shows the ranking as matrix: Ranked genes by classes.
object |
a GenesRanking |
showGeneID |
boolean. If TRUE, the genes will be shown with the gene IDs used in the expressionSet. This matrix will be |
showGeneLabels |
boolean. If TRUE, and if the ranking contains gene labels, the ranking matrix will use them. This matrix will be |
The method returns a list with one or two matrices: ...$geneLabels
and ...$geneID
.
Main package function and classifier training:
geNetClassifier
This method's class (GenesRanking
) help page.
data(leukemiasClassifier) getRanking(leukemiasClassifier@classificationGenes) # Top 7 genes (two ways): getRanking(leukemiasClassifier@genesRanking)$geneLabels[1:7,] getRanking(getTopRanking(leukemiasClassifier@genesRanking, 7)) # Show gene ID and select a class: getRanking(leukemiasClassifier@classificationGenes, showGeneID=TRUE )$geneID[,"CML", drop=FALSE]