flowTransResult-class {flowTrans} | R Documentation |
Class that contains the results of a call to flowTrans
on a flowFrame
Objects can be created by calls of the form new("flowTransResult", ...)
.
The object contains three slots: the transformed flowFrame, a transform
object from which the parameters can be extracted, and a dims
slot containing a character vector of the dimensions that have been transformed.
result
:Object of class "flowFrame"
. The transformed data.
trans
:Object of class "transform"
. The transform applied to the flowFrame. Parameters can be extracted via summary(trans)
.
dims
:Object of class "character"
. The names of the dimensions that have been transformed.
signature(object = "flowTransResult")
: Summarize the transformed data.
Greg Finak <greg.finak@ircm.qc.ca>, Raphael Gottardo <raphael.gottardo@ircm.qc.ca>.
Finak G, Perez JM, Weng A, Gottardo R. Optimizing Data Transformation for Flow Cytometry.
m <- t(matrix(rnorm(10000),2)) colnames(m) <- c("A","B") m <- flowFrame(m) res <- flowTrans(m,"mclMultivBoxCox", c("A","B"), n2f=FALSE, parameters.only=FALSE) summary(res) extractParams(res)