getBinExpr {flowBin} | R Documentation |
getBinExpr main function definition
method |
Method to use to compute expression, passed
as a string. Defaults to |
include.bin.medians |
logical, specifies whether to
compute the medians of each bin in terms of the binning
markers and include them in the result or not. Defaults
to |
scale |
logical specifying whether to scale the
results to the interval (0,1). If |
A numeric matrix containing expression values, with bins as rows and markers as columns
data(amlsample) normed.sample <- quantileNormalise(aml.sample) binned.sample <- flowFPBin(normed.sample) binned.sample <- removeSparseBins(binned.sample, 0.001) bin.expr <- getBinExpr(binned.sample) heatmap(bin.expr, scale='none')