makeSimSwishData {fishpond}R Documentation

Make simulated data for swish for examples/testing

Description

Makes a small swish dataset for examples and testing. The first six genes have some differential expression evidence in the counts, with varying degree of inferential variance across inferential replicates (1-2: minor, 3-4: some, 5-6: substantial). The 7th and 8th genes have all zeros to demonstrate labelKeep.

Usage

makeSimSwishData(
  m = 1000,
  n = 10,
  numReps = 20,
  null = FALSE,
  meanVariance = FALSE
)

Arguments

m

number of genes

n

number of samples

numReps

how many inferential replicates to generate

null

logical, whether to make an all null dataset

meanVariance

logical, whether to output only mean and variance of inferential replicates

Value

a SummarizedExperiment

Examples


library(SummarizedExperiment)
y <- makeSimSwishData()
assayNames(y)


[Package fishpond version 2.0.0 Index]