recluster {fcoex}R Documentation

Recluster cells based on fcoex module composition

Description

Recluster cells based on fcoex module composition

Usage

recluster(
  fc,
  hclust_method = "ward.D2",
  dist_method = "manhattan",
  k = 2,
  verbose = TRUE
)

## S4 method for signature 'fcoex'
recluster(
  fc,
  hclust_method = "ward.D2",
  dist_method = "manhattan",
  k = 2,
  verbose = TRUE
)

Arguments

fc

Object of class fcoex

hclust_method

method for the hclust function. Defaults to "ward.D2".

dist_method

method for the dist function. Defaults to "manhattan".

k

desired number of clustes. Defaults to 2.

verbose

Adds verbosity, defaults to TRUE.

Value

Object of class data.frame with new clusters

Examples

data("fc")
fc <- recluster(fc)

[Package fcoex version 1.7.2 Index]