plot_ora_single {fcoex}R Documentation

ORA visualization for one module

Description

This function was copied and adapted from the CEMiTool package. The visualization in this function is derivative of the intelectual work of CEMiTool's authors.

Usage

plot_ora_single(
  es,
  ordr_by = "p.adjust",
  max_length = 50,
  pv_cut = 0.05,
  graph_color = "#4169E1",
  title = "Over Representation Analysis"
)

Arguments

es

a data.frame from ora function containing only one module

ordr_by

column to order the data.frame

max_length

max length of a gene set name

pv_cut

p-value cuttoff

graph_color

color of bars

title

title of the graph

Value

a list with ggplot2 object and the number of significant gene sets


[Package fcoex version 1.7.2 Index]