makeplot {epidecodeR}R Documentation

Generate CDF plot using epidecodeR object generated using epidecodeR function

Description

Generate CDF plot using epidecodeR object generated using epidecodeR function

Usage

makeplot(obj, type, lim, title, xlab, ylab)

Arguments

obj

epidecodeR object - epidecodeR object generated using epidecodeR function

type

char - Type of CDF plot to generate; Accepted values 't': theoretical CDF plot; 'e': empirical CDF plot; 'both': Creates both theoretical and empirical plots. Default: both

lim

vector - Upper and lower limits of log2FC for X-axis

title

char - Title of the plot

xlab

char - X-axis label

ylab

char - Y-axis label

Value

A CDF plot

Examples

events<-system.file("extdata","NOMO-1_ref_peaks.bed", package="epidecodeR")
deg<-system.file("extdata", "FTOi.txt", package="epidecodeR")
epiobj<-epidecodeR(events=events,deg=deg,pval=0.05,param=3,ints=c(2,4))
makeplot(epiobj, lim = c(-10,10), xlab = "log2FC")

[Package epidecodeR version 1.1.3 Index]