plot_test {epidecodeR}R Documentation

Generates boxplot of distribution of log2FC of dysregulated genes and adjusted P value of signficance test of difference in mean log2FC between groups computed using one-way ANOVA test

Description

Generates boxplot of distribution of log2FC of dysregulated genes and adjusted P value of signficance test of difference in mean log2FC between groups computed using one-way ANOVA test

Usage

plot_test(obj, title, ylab)

Arguments

obj

epidecodeR object - epidecodeR object generated using epidecodeR function

title

Title of the plot

ylab

Y-axis label

Value

Boxplot of distribution of log2FC of dysregulated genes between groups

Examples

events<-system.file("extdata","NOMO-1_ref_peaks.bed",package="epidecodeR")
deg<-system.file("extdata", "FTOi.txt", package="epidecodeR")
epiobj<-epidecodeR(events=events,deg=deg,pval=0.05,param=3,ints=c(2,4))
plot_test(epiobj,title="log2FC distribution based on m6A degree",ylab="log2FC")

[Package epidecodeR version 1.1.3 Index]