TissueOpennessConserve {enrichTF} | R Documentation |
User provide region through a BED file. This function will provide tissue's open conservation analysis for these region.
enrichTissueOpennessConserve( prevStep, bedInput = NULL, openConserveBedInput = NULL, bedOutput = NULL, distrPdfOutput = NULL, ... ) ## S4 method for signature 'Step' enrichTissueOpennessConserve( prevStep, bedInput = NULL, openConserveBedInput = NULL, bedOutput = NULL, distrPdfOutput = NULL, ... ) tissueOpennessConserve( bedInput, openConserveBedInput = NULL, bedOutput = NULL, distrPdfOutput = NULL, ... )
prevStep |
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bedInput |
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openConserveBedInput |
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bedOutput |
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distrPdfOutput |
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... |
Additional arguments, currently unused. |
We collected 201 DNase-seq or ATAC-seq sample from ENCODE and calculate their open level value. They can be download and install automatically. So users do not need to configure themselves.
An invisible EnrichStep-class
object (Step-class
based) scalar for downstream analysis.
Zheng Wei
foregroundBedPath <- system.file(package = "enrichTF", "extdata","testregion.bed") tissueOpennessConserve(bedInput = foregroundBedPath)