GeneOntology {enrichTF} | R Documentation |
User provide target gene list of forground region. This function will call function for gene ontology enrichment analysis
enrichGeneOntology( prevStep, inputTxt = NULL, outputTxt = NULL, outputPdf = NULL, orgDb = NULL, keyType = "SYMBOL", ... ) ## S4 method for signature 'Step' enrichGeneOntology( prevStep, inputTxt = NULL, outputTxt = NULL, outputPdf = NULL, orgDb = NULL, keyType = "SYMBOL", ... ) geneOntology( inputTxt, outputTxt = NULL, outputPdf = NULL, orgDb = NULL, keyType = "SYMBOL", ... )
prevStep |
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inputTxt |
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outputTxt |
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outputPdf |
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orgDb |
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keyType |
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Additional arguments, currently unused. |
Currently, this function call enrichGO from package clusterProfiler to implement this funtion.
An invisible EnrichStep-class
object
(Step-class
based) scalar for downstream analysis.
Zheng Wei
regionConnectTargetGene
enrichRegionConnectTargetGene
genelist.txt <- system.file(package = "enrichTF", "extdata","genelist.txt") geneOntology(inputTxt = genelist.txt, orgDb = "org.Hs.eg.db")