queryEncode {enhancerHomologSearch} | R Documentation |
Search ENCODE data by querying the ENCODE Portal using its REST API.
queryEncode( exactMatch, partialMatch = character(0), API_url = "https://www.encodeproject.org/search/", ... )
exactMatch |
character. Exact-match keywords refer to search results that perfectly match all the keywords in the search query, exactly as entered. It is a named character vector. The names will be the keys and characters will be the values for search. |
partialMatch |
character. Partial-match refer to search results that contain the search query. It is a named character vector. The names will be the keys and characters will be the values for search. The value starting from '!' indicates logical negation(NOT). The value starting from '>', '>=', '<', '==', '<=' indicates string comparison. |
API_url |
character. The ENCODE REST API url. |
... |
Not used. |
A list of search results
res <- queryEncode( exactMatch=c( target.label="H3K4me1", replicates.library.biosample.donor.organism.scientific_name="Homo sapiens", assembly="GRCh38", assay_term_name="ChIP-seq"), partialMatch=c(biosample_summary="heart"))