getHumanGenes {diffloop} | R Documentation |
getHumanGenes
returns a GRanges
object of all protein
coding genes genome-wide or within specified chromosomes. Annotation
is from regions from hg19/Gr37 and protein coding genes.
getHumanGenes(chr, cache = TRUE) ## S4 method for signature 'missing' getHumanGenes(chr, cache = TRUE) ## S4 method for signature 'character' getHumanGenes(chr, cache = TRUE)
chr |
A vector of chromosomes |
cache |
logic variable (default = TRUE) to use genes from July.2015 freeze |
This function returns a GRanges
object with the coordinates and
gene IDs of all protein coding genes either genome-wide
(by default) orspecified within a particular chromosome.
A GRanges object
# Grab all protein coding gene locations genome-wide pc.genes <- getHumanGenes() # Grab all protein coding gene loctions on chromosome 1 chr1 <- getHumanGenes(c('1'))