.decoupler_network_format {decoupleR}R Documentation

DecoupleR network format

Description

A network passed to any run_ method in the package must contain at least two attributes: .source and .target. In addition, the methods must map their corresponding metadata associated with their edges.

Arguments

network

Tibble or dataframe with edges and it's associated metadata.

.source

Column with source nodes.

.target

Column with target nodes.

.mor

Column with edge mode of regulation (i.e. mor).

.likelihood

Column with edge likelihood.

Details

See Also

Other decoupleR formats: .decoupler_mat_format


[Package decoupleR version 1.99.5 Index]