isAlexandrovSet {decompTumor2Sig}R Documentation

isAlexandrovSet

Description

'isAlexandrovSet()' checks whether the input object is a set (list) of numeric objects compatible with the Alexandrov format (probability vectors; sum up to 1). NOTE: These can also be genomes compatible with the Alexandrov format!

Usage

isAlexandrovSet(x)

Arguments

x

Object to be checked.

Value

Logical value (true or false).

Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

See Also

decompTumor2Sig
readAlexandrovSignatures
isSignatureSet

Examples


### get Alexandrov signatures from COSMIC
signAlexandrov <- readAlexandrovSignatures()

isAlexandrovSet(signAlexandrov)

[Package decompTumor2Sig version 2.9.0 Index]