CytoKFeaturesOrdered {cytoKernel} | R Documentation |
Given a CytoK object, this function returns the CytoK features ordered by adjusted p values
Accessors for the 'CytoKFeaturesOrdered' slot of a CytoK object.
CytoKFeaturesOrdered(object) ## S4 method for signature 'CytoK' CytoKFeaturesOrdered(object)
object |
an object of class |
the data.frame with shrunk effect size, shrunk effect size sd, unadjusted p value and adjusted p value for each feature ordered by unadjusted p value from low to high.
data <- cbind(matrix(rnorm(1200,mean=2, sd=1.5), nrow=200, ncol=6), matrix(rnorm(1200,mean=5, sd=1.9), nrow=200, ncol=6)) data_CytoK <- CytoK(object=data, group_factor = rep(c(0,1), each=6), lowerRho=2, upperRho=12,gridRho=4,alpha = 0.05, featureVars = NULL) CytoKFeaturesOrdered(data_CytoK)