rowNumbers {cyanoFilter}R Documentation

returns the position of the cells below, above or between estimated gates

Description

returns the position of the cells below, above or between estimated gates

Usage

rowNumbers(flowframe, gates, ch)

Arguments

flowframe

after debris are removed.

gates

cut point between the identified clusters

ch

gated channel

Value

a numeric vector

Examples

flowfile_path <- system.file("extdata", "B4_18_1.fcs", 
                  package = "cyanoFilter",
              mustWork = TRUE)
flowfile <- flowCore::read.FCS(flowfile_path, alter.names = TRUE,
                               transformation = FALSE, emptyValue = FALSE,
                               dataset = 1) 
flowfile_nona <- cyanoFilter::noNA(x = flowfile)
flowfile_noneg <- cyanoFilter::noNeg(x = flowfile_nona)
flowfile_logtrans <- cyanoFilter::lnTrans(x = flowfile_noneg, 
c('SSC.W', 'TIME'))
oneDgate(flowfile, 'RED.B.HLin')


[Package cyanoFilter version 1.1.1 Index]