add_vsd {crossmeta}R Documentation

Add VST normalized assay data element to expression set

Description

For microarray datasets duplicates exprs slot into vsd slot.

Usage

add_vsd(eset, rna_seq = TRUE)

Arguments

eset

ExpressionSet with group column in pData(eset)

rna_seq

Is this an RNA-seq eset? Default is TRUE.

pbulk

Is this an pseudobulk single-cell eset? Default is FALSE. Used by package dseqr.

vsd_path

Path to save result to. Allows skipping running transform on each load.

Value

eset with 'vsd' assayDataElement added.


[Package crossmeta version 1.19.0 Index]