omnipath_ptm {cosmosR} | R Documentation |
Collection of annotated enzyme-substrate post translational modifications obtained from OmniPath.
data(omnipath_ptm)
An object of class “data.frame
” with 39201 rows (PTMs)
and 12 variables:
enzyme
substrate
enzyme_genesymbol
substrate_genesymbol
residue_type
residue_offset
modification
sources
references
curation_effort
n_references
n_resources
Default resource collection of OmniPath: http://omnipathdb.org/ptms?fields=sources,references&genesymbols=1, version of Feb 5th, 2020.
Turei, D., Korcsmaros, T. and Saez-Rodriguesz, J. (2016) Nature Methods. 13(12), 966–967.
data(omnipath_ptm)