orderContigsGreedy {contiBAIT} | R Documentation |
Function to order contigs within a single linkage group using a greedy algorithms Attempt to order contigs within
orderContigsGreedy(linkageGroupReadTable, randomAttempts = 75, nProcesses = 1, verbose = TRUE)
linkageGroupReadTable |
dataframe of strand calls (product of combineZeroDists or preprocessStrandTable) |
randomAttempts |
number of times to repeat the greedy algortihm with a random restart |
nProcesses |
number of processes to attempt ordering in parallel |
verbose |
whether to print verbose messages |
list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered