precomputeBootstrapMeans {compartmap} | R Documentation |
Pre-compute the global means for bootstrapping compartments
precomputeBootstrapMeans( obj, targets = NULL, num.bootstraps = 100, assay = c("atac", "rna"), parallel = FALSE, num.cores = 1 )
obj |
Input SummarizedExperiment object |
targets |
Optional targets to shrink towards |
num.bootstraps |
The number of bootstraps to compute |
assay |
What type of assay the data are from |
parallel |
Whether to run in parallel |
num.cores |
How many cores to use for parallel processing |
A matrix of bootstrapped global means
data("k562_scrna_chr14", package = "compartmap") scrna.bootstrap.global.means <- precomputeBootstrapMeans(k562_scrna_chr14, assay = "rna", num.bootstraps = 2)