estIndepModel {combi} | R Documentation |
Estimate the independence model belonging to one view
estIndepModel(data, distribution, compositional, maxIt, tol, link, invLink, meanVarFit, newtonRaphson, dispFreq, ...)
data |
a list of data matrices with the same number of samples n in the rows. Also phyloseq objects are acceptable |
distribution |
a character string describing which distributional assumption should be used. |
compositional |
A logical indicating if the dataset should be treated as compositional |
maxIt |
an integer, the maximum number of iterations |
tol |
A small scalar, the convergence tolerance |
link, invLink |
link and inverse link function |
meanVarFit |
mean variance model |
newtonRaphson |
a boolean, should newton-raphson be used |
dispFreq |
An integer, frequency of dispersion estimation |
... |
passed on to the estOff() function |
A list with elements
rowOff |
The row offsets |
colOff |
The column offsets |
converged |
A logical flag, indicating whether the fit converged |
iter |
An integer, the number of iterations |