extractCoords {combi}R Documentation

Extract coordinates from fitted object

Description

Extract coordinates from fitted object

Usage

extractCoords(modelObj, Dim)

Arguments

modelObj

The fitted model

Dim

the required dimensions

Value

A list with components (matrices with two columns)

latentData

The latent variables

featureData

The feature parameters

varData

The variables

Examples

data(Zhang)

#Unconstrained
microMetaboInt = combi(
list("microbiome" = zhangMicrobio, "metabolomics" = zhangMetabo),
distributions = c("quasi", "gaussian"), compositional = c(TRUE, FALSE),
logTransformGaussian = FALSE, verbose = TRUE)

    #Load the fits
load(system.file("extdata", "zhangFits.RData", package = "combi"))
extractCoords(microMetaboInt, Dim = c(1,2))

[Package combi version 1.5.0 Index]