write.gctx {cmapR} | R Documentation |
Write a GCT object to disk in GCTX format
write.gctx(...) write_gctx( ds, ofile, appenddim = TRUE, compression_level = 0, matrix_only = FALSE, max_chunk_kb = 1024 )
... |
arguments passed on to |
ds |
a GCT object |
ofile |
the desired file path for writing |
appenddim |
boolean indicating whether the resulting filename will have dimensions appended (e.g. my_file_n384x978.gctx) |
compression_level |
integer between 1-9 indicating how much to compress data before writing. Higher values result in smaller files but slower read times. |
matrix_only |
boolean indicating whether to write only the matrix data (and skip row, column annotations) |
max_chunk_kb |
for chunking, the maximum number of KB a given chunk will occupy |
silently returns NULL
Other GCTX parsing functions:
GCT
,
append.dim()
,
fix.datatypes()
,
parse.gctx()
,
process_ids()
,
read.gctx.ids()
,
read.gctx.meta()
,
write.gctx.meta()
,
write.gct()
# note this will create a GCT file in your current directory write_gctx(ds, "dataset")