marker_select {clustifyr} | R Documentation |
decide for one gene whether it is a marker for a certain cell type
marker_select(row1, cols, cut = 1, compto = 1)
row1 |
a numeric vector of expression values (row) |
cols |
a vector of cell types (column) |
cut |
an expression minimum cutoff |
compto |
compare max expression to the value of next 1 or more |
vector of cluster name and ratio value
pbmc_avg <- average_clusters( mat = pbmc_matrix_small, metadata = pbmc_meta, cluster_col = "classified", if_log = FALSE ) marker_select( row1 = pbmc_avg["PPBP", ], cols = names(pbmc_avg["PPBP", ]) )