plotDeviationsTsne {chromVAR} | R Documentation |
plots sample similarity tsne
plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL, annotation_name = NULL, shiny = interactive())
object |
deviations result object |
tsne |
result from |
var_df |
variability result |
sample_column |
column name for sample data – colData(object) – to be used for coloring points |
annotation_name |
name of chromVAR annotation for coloring points |
shiny |
return shiny app? otherwise return static plots |
shiny app or plots
Alicia Schep