import_function_non_ucsc {chimeraviz}R Documentation

Alternative import function for Gviz::AlignmentsTrack

Description

This alternative import function for use with Gviz::AlignmentsTrack imports a bamfile with non-UCSC chromosome names.

Usage

import_function_non_ucsc(file, selection)

Arguments

file

The bamfile.

selection

Which regions to get from the bamfile.

Value

A GRanges object with coverage data for the selection.


[Package chimeraviz version 1.19.0 Index]