import_prada {chimeraviz} | R Documentation |
A function that imports the results from a PRADA run into a list of Fusion objects.
import_prada(filename, genome_version, limit)
filename |
Filename for the PRADA results file. |
genome_version |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
pradaData <- system.file( "extdata", "PRADA.acc.fusion.fq.TAF.tsv", package = "chimeraviz") fusions <- import_prada(pradaData, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.