import_function_non_ucsc {chimeraviz} | R Documentation |
This alternative import function for use with Gviz::AlignmentsTrack imports a bamfile with non-UCSC chromosome names.
import_function_non_ucsc(file, selection)
file |
The bamfile. |
selection |
Which regions to get from the bamfile. |
A GRanges object with coverage data for the selection.