Prep4OptimizeParams {cellmigRation} | R Documentation |
Pre-processing as part of the Optimization Parameter process
Prep4OptimizeParams( stack_img, lnoise_range = NULL, min.px.diam = 5, diameter_range = NULL, threshold_range = NULL, target_cell_num = NULL, quantile.val = NULL, px.margin = NULL, plot = FALSE, verbose = FALSE )
stack_img |
input image |
lnoise_range |
numeric, lnoise values to test |
min.px.diam |
numeric, minimum number of pixels of a cell signal |
diameter_range |
numeric, numeric values for diameter |
threshold_range |
numeric, numeric values for threshold |
target_cell_num |
numeric, target number of cells, can be NULL |
quantile.val |
numeric, the quantile prob used to suppress noise |
px.margin |
numeric, the frame margin size |
plot |
logical, shall a plot be printed |
verbose |
logical, shall info be printed to console |
This is an internal function supporting the Optimization Parameter steps
a data frame of combined parameters to be tested
x <- get(data(TrackCellsDataset)) x <- cellmigRation::getCellImages(x = x) y <- cellmigRation:::Prep4OptimizeParams(stack_img = x) y$success