visualizeTrcks {cellmigRation}R Documentation

Visualize Cell Tracks

Description

Annotates an image with cell centroids by adding cell ROIs and drawing cell tracks

Usage

visualizeTrcks(
  tracks,
  width_px,
  height_px,
  i.slice = 1,
  pnt.cex = 1.2,
  lwd = 1.2,
  col = "red"
)

Arguments

tracks

cell tracks

width_px

width in pixels

height_px

height in pixels

i.slice

index of the stack slice to use

pnt.cex

cex for the points (circles) drawn around the cells

lwd

lwd of cell tracks

col

color used for the cell tracks, .g. "red"

Value

None

Author(s)

Damiano Fantini, damiano.fantini@gmail.com

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

x1 <- data.frame(c(10, 30, 25, 55, 43, 39, 75, 72),
                 c(22, 28, 35, 24, 31, 39, 65, 73),
                 c( 1,  2,  3,  4,  5,  6,  7,  8),
                 c( 1,  1,  1,  1,  1,  1,  1,  1))
plot(2, 2, xlim = c(0,1), ylim = c(0,1), xlab = "", ylab = "", las = 2)
cellmigRation:::visualizeTrcks(x1, width_px = 100, height_px = 100)



[Package cellmigRation version 1.1.0 Index]