visualizeCellTracks {cellmigRation}R Documentation

Visualize Cell Tracks originating at an Image Stack

Description

Visualize Cell Tracks that originated at an Image Stack of interest

Usage

visualizeCellTracks(
  tc_obj,
  stack = 1,
  pnt.cex = 1.2,
  lwd = 1.6,
  col = "red2",
  col.untracked = "gray45",
  main = NULL
)

Arguments

tc_obj

a trackedCells object

stack

index of the stack

pnt.cex

cex of the point drawn around each cell

lwd

width of the lines visualizing cell tracks

col

color of the points and the tracks, e.g.: "red2"

col.untracked

color of the points that were not tracked further, e.g.: "gray45"

main

string used as plot title, can be NULL

Value

None

Author(s)

Damiano Fantini, damiano.fantini@gmail.com

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

x <- get(data(TrackCellsDataset))
visualizeCellTracks(tc_obj = x, stack = 2)



[Package cellmigRation version 1.1.0 Index]