getGene,CellBaseR-method {cellbaseR} | R Documentation |
A method to query gene data from Cellbase web services.
## S4 method for signature 'CellBaseR' getGene(object, ids, resource, param = NULL)
object |
an object of class CellBaseR |
ids |
a character vector of gene ids to be queried |
resource |
a character vector to specify the resource to be queried |
param |
an object of class CellBaseParam specifying additional param for the CellBaseR |
This method retrieves various gene annotations including transcripts and exons data as well as gene expression and clinical data
a dataframe with the results of the query
https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/
cb <- CellBaseR() res <- getGene(object=cb, ids=c("TP73","TET1"), resource="info")