get_counts_index {celaref}R Documentation

get_counts_index

Description

get_counts_index is an internal utility function to find out where the counts are (if anywhere.). Stops if there's no assay called 'counts', (unless there is only a single unnamed assay).

Usage

get_counts_index(n_assays, assay_names)

Arguments

n_assays

How many assays are there? ie: length(assays(dataset_se))

assay_names

What are the assays called? ie: names(assays(dataset_se))

Value

The index of an assay in assays called 'counts', or, if there's just the one unnamed assay - happily assume that that is counts.


[Package celaref version 1.11.0 Index]