GENccEnrichResult-class {categoryCompare} | R Documentation |
"GENccEnrichResult"
Holds generic ccEnrich
type results
Objects can be created by calls of the form new("GENccEnrichResult", ...)
.
.Data
:Object of class "list"
The actual list containing the ccEnrichResults
categoryName
:Object of class "character"
ontology
:Object of class "character"
geneAnnMapping
:Object of class "namedList"
graphType
:Object of class "character"
names
:Object of class "character"
Class "namedList"
, directly.
Class "list"
, by class "namedList", distance 2.
Class "vector"
, by class "namedList", distance 3.
Class "AssayData"
, by class "namedList", distance 3.
signature(x = "GENccEnrichResult", i = "ANY", j = "ANY")
: Subsets the object to just those lists that are desired
signature(object = "GENccEnrichResult")
:
signature(gccResult = "GENccEnrichResult", ccOptions = "ccOptions")
: ...
signature(object = "GENccEnrichResult")
: ...
signature(object = "GENccEnrichResult")
: ...
signature(object = "GENccEnrichResult")
: ...
signature(object = "GENccEnrichResult")
: ...
Robert M Flight
data(ccData) locA <- grep("A",gseaRes$Tissues) locL <- grep("L",gseaRes$Tissues) locM <- grep("M",gseaRes$Tissues) A <- new("ccSigList",sigID=gseaRes$KEGGID[locA],categoryName="KEGG",annotation="org.Mm.eg") L <- new("ccSigList",sigID=gseaRes$KEGGID[locL],categoryName="KEGG",annotation="org.Mm.eg") M <- new("ccSigList",sigID=gseaRes$KEGGID[locM],categoryName="KEGG",annotation="org.Mm.eg") ccEnrichCol <- list(A=A,L=L,M=M) ccEnrichCol <- new("GENccEnrichResult", ccEnrichCol, categoryName="KEGG")