txLength {casper} | R Documentation |
txLength
in Package casper ~~~~ Methods for function txLength
in package casper ~~
Function to retrieve transcript lengths from annotated genome (class genomeDB).
txLength(islandid, txid, genomeDB)
islandid |
Retrieve length for transcripts in island |
txid |
Retrieve length for |
genomeDB |
Annotated genome of class |
When called for the first time lengths are calculated and stored in
the object genomeDB
. Subsequent calls refer to these computed
values.
Named numeric vector with transcript lengths.
signature(islandid = "character", txid = "missing", genomeDB = "annotatedGenome")
Retrieve lengths from genomeDB for transcripts in islandid
islands.
signature(islandid = "missing", txid = "character", genomeDB = "annotatedGenome")
Retrieve lengths from genomeDB
for txid
transcripts.
signature(islandid = "missing", txid = "missing", genomeDB = "annotatedGenome")
Retrieve or calculate lengths for all transcripts in the annotated
genome genomeDB
.