showBioMatrixPlotLayout {caOmicsV} | R Documentation |
Display caOmicsV bioMatrix layout with default information for each plot area for purpose of optimizing the layout. A bioMatrix layout must be initialized first.
showBioMatrixPlotLayout(geneNames, sampleNames, phenotypes, secondGeneNames, sampleColors=NULL, geneColors=NULL, phenoColors=NULL)
geneNames |
character vector, gene names shown at left side of omics data plot area |
sampleNames |
character vector, sample names shown on the top of phenotype plot area |
phenotypes |
character vector, phenotype names listed on left side of phenotype plot area |
secondGeneNames |
character vector, second gene names shown at right side of omics data area |
sampleColors |
character vector for color name(s) of R color specification for samples |
geneColors |
character vector of color name or R color specification for genes |
phenoColors |
character vector of color name(s) or R color specification for phenotypes |
None
Henry Zhang
initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50) showBioMatrixPlotLayout(geneNames="Gene", sampleNames=paste("Sample", 1:50), phenotypes="Diagnosis", secondGeneNames="miRNA")