loadExpressionDrugSensitivityAssociation {cTRAP} | R Documentation |
Load gene expression and drug sensitivity correlation matrix
loadExpressionDrugSensitivityAssociation( source, file = NULL, rows = NULL, cols = NULL, loadValues = FALSE )
source |
Character: source of matrix to load; see
|
file |
Character: filepath to gene expression and drug sensitivity association dataset (automatically downloaded if file does not exist) |
rows |
Character or integer: rows |
cols |
Character or integer: columns |
loadValues |
Boolean: load data values (if available)? If |
Correlation matrix between gene expression (rows) and drug sensitivity (columns)
Other functions related with the prediction of targeting drugs:
as.table.referenceComparison()
,
listExpressionDrugSensitivityAssociation()
,
plot.referenceComparison()
,
plotTargetingDrugsVSsimilarPerturbations()
,
predictTargetingDrugs()
gdsc <- listExpressionDrugSensitivityAssociation()[[1]] loadExpressionDrugSensitivityAssociation(gdsc)