Node_obj_Met_ProfData {bioCancer} | R Documentation |
Attribute gene Methylation to Nodes
Node_obj_Met_ProfData(list, type, threshold)
list |
a list of data frame with methylation data |
type |
HM450 or HM27 |
threshold |
the Rate cases (patients) that have a silencing genes by methylation |
a data frame with node shape attributes
cgds <- CGDS("http://www.cbioportal.org/") ## Not run: GeneList <- whichGeneList("DNA_damage_Response") ProfDataMET <- cgdsr::getProfileData(cgds,GeneList, "gbm_tcga_pub_methylation","gbm_tcga_pub_all") ListProfDataMET <- list(ls1=ProfDataMET, ls2=ProfDataMET) nodeObj <- Node_obj_Met_ProfData(ListProfDataMET, "HM450",0.1) ## End(Not run)