getGenesClassification {bioCancer}R Documentation

get genes classification

Description

get genes classification

Usage

getGenesClassification(checked_Studies, GeneList,
 samplesize, threshold, listGenProfs, listCases)

Arguments

checked_Studies

checked studies

GeneList

gene list

samplesize

sample size

threshold

p-value threshold

listGenProfs

list of genetic profiles

listCases

list of cases

Value

A table with genes classed by study

Examples

cgds <- CGDS("http://www.cbioportal.org/")
listStudies <-  cgdsr::getCancerStudies(cgds)
## Not run: 
checked_Stdudies <- listStudies[3:5]
listCases <- getList_Cases(listStudies[1:3])
listGenProfs <- getList_GenProfs(listStudies[1:3])
GeneList <- c('P53', 'IFI16', 'BRCA1')
samplesize <- 50
threshold <- 0.95
table <- getGenesClassification(checked_Studies, GeneList,
samplesize  ,threshold  ,listGenProfs, listCases)

## End(Not run)


[Package bioCancer version 1.21.02 Index]