scatter_plot {barcodetrackR} | R Documentation |
Plots a scatter plot of two samples in the Summarized Experiment object
scatter_plot( your_SE, assay = "proportions", plot_labels = colnames(your_SE), method_corr = "pearson", display_corr = TRUE, point_size = 0.5, your_title = "", text_size = 12 )
your_SE |
A Summarized Experiment object of two samples. |
assay |
The choice of assay to plot on the scatter plot. Set to "proportions" by default. |
plot_labels |
The labels for the X and Y axis of the plot |
method_corr |
Character. One of "pearson", "spearman", or "kendall". Can also use "manhattan" to compute manhattan distance instead. |
display_corr |
Logical. Whether to display the computer correlation or not. |
point_size |
Numeric. The size of the points being plotted. |
your_title |
Logical. The title for the plot. |
text_size |
Numeric. Size of text in plot. |
Displays a scatter plot of the specified assay for the specified samples in your_SE with correlation value optionally displayed.
data(wu_subset) scatter_plot(your_SE = wu_subset[, c(4, 8)]) # "