explore_transformations {autonomics}R Documentation

Explore transformations

Description

Explore transformations

Usage

explore_transformations(
  object,
  subgroup = subgroup,
  transformations = c("quantnorm", "zscore", "invnorm"),
  method = "pca",
  xdim = 1,
  ydim = 2,
  ...
)

Arguments

object

SummarizedExperiment

subgroup

subgroup (sym)

transformations

vector

method

'pca', 'pls', 'sma', or 'lda'

xdim

number (default 1)

ydim

number (default 2)

...

passed to plot_data

Value

grid object

Examples

file <- download_data('billing16.proteingroups.txt')
invert <- c('EM_E', 'EM_BM', 'BM_E')
object <- read_proteingroups(file, invert_subgroups = invert, plot=FALSE)
explore_transformations(object)

[Package autonomics version 1.1.7 Index]