create_design {autonomics} | R Documentation |
Create design matrix for statistical analysis
create_design( object, subgroupvar = if ("subgroup" %in% svars(object)) "subgroup" else NULL, formula = default_formula(object, subgroupvar, fit = "limma"), verbose = TRUE )
object |
SummarizedExperiment |
subgroupvar |
subgroup svar |
formula |
formula with svars |
verbose |
whether to message |
design matrix
file <- download_data('billing19.rnacounts.txt') object <- read_rnaseq_counts(file, plot=FALSE) unique(create_design(object)) object$subgroup <- 'billing19' unique(create_design(object)) file <- download_data('atkin18.somascan.adat') object <- read_somascan(file, plot=FALSE) unique(create_design(object)) create_design(object, formula= ~ 0 + SampleGroup + Sex + T2D + age + bmi) object$subgroup <- 'atkin18' unique(create_design(object))