plot_features {autonomics} | R Documentation |
Plot features
plot_features( object, geom, subgroup, x = !!enquo(subgroup), fill = !!enquo(subgroup), color = !!enquo(subgroup), ..., fixed = list(na.rm = TRUE), theme = list(axis.text.x = element_blank(), axis.title.x = element_blank(), axis.ticks.x = element_blank()) ) plot_feature_profiles(...)
object |
SummarizedExperiment |
geom |
geom_point, geom_boxplot, etc. |
subgroup |
subgroup svar |
x |
svar mapped to x |
fill |
svar mapped to fill |
color |
svar mapped to color |
... |
mapped aesthetics |
fixed |
fixed aesthetics |
theme |
ggplot theme specifications |
ggplot object
require(magrittr) file <- download_data('halama18.metabolon.xlsx') object <- read_metabolon(file, pca=TRUE, plot = FALSE) idx <- order(abs(fdata(object)$pca1), decreasing=TRUE)[1:9] object %<>% extract(idx, ) plot_feature_boxplots(object) plot_subgroup_boxplots(object, subgroup=Group) plot_feature_profiles( object, subgroup=Group)