download_gtf {autonomics} | R Documentation |
Download GTF file with feature annotations
download_gtf( organism, release = 100, gtffile = sprintf("%s/gtf/%s", rappdirs::user_cache_dir(appname = "autonomics"), basename(make_gtf_url(organism, release) %>% substr(1, nchar(.) - 3))) )
organism |
'Homo sapiens', 'Mus musculus' or 'Rattus norvegicus' |
release |
GTF release (number) |
gtffile |
string: path to local GTF file |
gtffile path
organism <- 'Homo sapiens' # download_gtf(organism)