explore_transformations {autonomics} | R Documentation |
Explore transformations
explore_transformations( object, subgroup = subgroup, transformations = c("quantnorm", "zscore", "invnorm"), method = "pca", xdim = 1, ydim = 2, ... )
object |
SummarizedExperiment |
subgroup |
subgroup (sym) |
transformations |
vector |
method |
'pca', 'pls', 'sma', or 'lda' |
xdim |
number (default 1) |
ydim |
number (default 2) |
... |
passed to plot_data |
grid object
file <- download_data('billing16.proteingroups.txt') invert <- c('EM_E', 'EM_BM', 'BM_E') object <- read_proteingroups(file, invert_subgroups = invert, plot=FALSE) explore_transformations(object)