make_volcano_dt {autonomics} | R Documentation |
Create volcano datatable
make_volcano_dt( object, fit, contrastdefmat = contrastdefs(object)[[1]], ntop = 3 )
object |
SummarizedExperiment |
fit |
'limma', 'lme', 'lm', 'wilcoxon' |
contrastdefmat |
contrastdef matrix |
ntop |
no of top features to be annotated |
data.table
file <- download_data('fukuda20.proteingroups.txt') object <- read_proteingroups(file, fit='limma', plot=FALSE) make_volcano_dt(object, fit = 'limma')