log2transform {autonomics}R Documentation

Transform values

Description

Transform values

Usage

log2transform(object, verbose = FALSE)

exp2(object, verbose = FALSE)

zscore(object, verbose = FALSE)

quantnorm(object, verbose = FALSE)

invnorm(object, verbose = FALSE)

Arguments

object

SummarizedExperiment

verbose

TRUE or FALSE

Value

Transformed sumexp

Examples

require(magrittr)
file <- download_data('fukuda20.proteingroups.txt')
object <- read_proteingroups(file, plot=FALSE, impute=FALSE)

object                       %>% plot_sample_densities()
invnorm(object)              %>% plot_sample_densities()

object                       %>% plot_sample_densities()
quantnorm(object)            %>% plot_sample_densities()

object                       %>% plot_sample_densities()
zscore(object)               %>% plot_sample_densities()

object                       %>% plot_sample_densities()
exp2(object)                 %>% plot_sample_densities()
log2transform(exp2(object))  %>% plot_sample_densities()

[Package autonomics version 1.1.7 Index]