plot_contrastogram {autonomics} | R Documentation |
Plot contrastogram
plot_contrastogram( object, subgroupvar, formula = default_formula(object, subgroupvar, "limma"), colors = make_colors(slevels(object, subgroupvar), guess_sep(object)), curve = 0.1 )
object |
SummarizedExperiment |
subgroupvar |
subgroup svar |
formula |
formula |
colors |
named color vector (names = subgroups) |
curve |
arrow curvature |
list returned by plotmat
if (requireNamespace('diagram', quietly = TRUE)){ file <- download_data('halama18.metabolon.xlsx') object <- read_metabolon(file, fit='limma', plot=FALSE) plot_contrastogram(object, subgroupvar = 'Group') }