summarize_fit {autonomics}R Documentation

Summarize fit

Description

Summarize fit

Usage

summarize_fit(object, fit = intersect(names(metadata(object)), TESTS)[1])

Arguments

object

SummarizedExperiment

fit

'limma', 'lme', 'lm', 'lme', 'wilcoxon'

Value

data.table(contrast, nup, ndown)

Examples

file <- download_data('billing19.rnacounts.txt')
object <- read_rnaseq_counts(file, fit='limma', plot=FALSE)
summarize_fit(object, 'limma')

[Package autonomics version 1.1.7 Index]