standardize_maxquant_snames {autonomics} | R Documentation |
Standardize maxquant sample names
standardize_maxquant_snames(x, ...) ## S3 method for class 'character' standardize_maxquant_snames( x, quantity = guess_maxquant_quantity(x), verbose = FALSE, ... ) ## S3 method for class 'SummarizedExperiment' standardize_maxquant_snames( x, quantity = guess_maxquant_quantity(x), verbose = FALSE, ... )
x |
character vector or SummarizedExperiment |
... |
allow for proper S3 method dispatch |
quantity |
maxquant quantity |
verbose |
TRUE (default) or FALSE |
Drop "Ratio normalized", "LFQ intensity" etc from maxquant sample names
character vector or SummarizedExperiment
# character vector x <- "Ratio M/L normalized STD(L)_E00(M)_E01(H)_R1" standardize_maxquant_snames(x) x <- "Ratio M/L STD(L)_E00(M)_E01(H)_R1" standardize_maxquant_snames(x) x <-'LFQ intensity STD_R1' standardize_maxquant_snames(x) x <- 'LFQ intensity L STD(L)_E00(M)_E01(H)_R1' standardize_maxquant_snames(x) x <-'Reporter intensity 0 A(0)_B(1)_C(2)_D(3)_E(4)_F(5)_R1' standardize_maxquant_snames(x) x <- 'Reporter intensity corrected 0 A(0)_B(1)_C(2)_D(3)_E(4)_F(5)_R1' standardize_maxquant_snames(x)