GetIUPACSequence {atSNP}R Documentation

Get the IUPAC sequence of a motif.

Description

Convert the posotion weight matrix of a motif to the IUPAC sequence.

Usage

GetIUPACSequence(pwm, prob = 0.25)

Arguments

pwm

The position weight matrix, with the columns representing A, C, G, T.

prob

The probability threshold. Default: 0.25.

Value

A character string.

Author(s)

Sunyoung Shin sunyoung.shin@utdallas.edu, Chandler Zuo chandler.c.zuo@gmail.com

Examples

data(example)
GetIUPACSequence(motif_library[[1]], prob = 0.2)

[Package atSNP version 1.9.0 Index]