.abundanceAnalysis {abseqR}R Documentation

Conducts abundance analysis

Description

Conducts abundance analysis

Usage

.abundanceAnalysis(abundanceDirectories, abunOut, sampleNames,
  combinedNames, mashedNames, skipDgene = FALSE, .save = TRUE)

Arguments

abundanceDirectories

list type. List of sample directories

abunOut

string type. Output directory

sampleNames

vector type. 1-1 correspondence with abundanceDirectories

combinedNames

string type. Title "combined" sample names

mashedNames

string type. File "mashed" names - avoid special chars

skipDgene

logical type. Skip D gene plots?

.save

logical type. Save ggplot as Rdata

Value

None


[Package abseqR version 1.11.0 Index]