.plotPrimerIGVStatus {abseqR}R Documentation

Plots, for a given category and pend, the primer IGV indelled distribution in a bar plot

Description

Plots the abundace of indelled primers relative to IGV germlines

Usage

.plotPrimerIGVStatus(primer, pend, category, primerDirectories,
  sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)

Arguments

primer

string, primer name

pend

string, either 3 or 5 (primer end)

category

string, either "all", "productive", or "outframe"

primerDirectories

string type. Path to primer analysis directory

sampleNames

vector type. 1-1 with primerDirectories

primerOut

string type. output directory

combinedNames

string type. Title friendly "combined" sample names

mashedNames

string type. File friendly "mashed-up" sample names

.save

logical type. Save Rdata?

Value

None


[Package abseqR version 1.11.0 Index]