.readSummary {abseqR}R Documentation

Return value specifed by key from AbSeq's summary file

Description

Return value specifed by key from AbSeq's summary file

Usage

.readSummary(sampleRoot, key)

Arguments

sampleRoot

sample's root directory. For example, /path/to/<outputdir>/reports/<sample_name>.

key

character type. Possible values are (though they might change)

  • RawReads

  • AnnotatedReads

  • FilteredReads

  • ProductiveReads

Value

value associated with key from summary file. "NA" (in string) if the field is not available refer to util.R for the key values


[Package abseqR version 1.11.0 Index]