plotExchangeSpectra {YAPSA}R Documentation

Plot the spectra of nucleotide exchanges

Description

Plots the spectra of nucleotide exchanges in their triplet contexts. If several columns are present in the input data frame, the spectra are plotted for every column separately.

Usage

plotExchangeSpectra(
  in_catalogue_df,
  in_colour_vector = NULL,
  in_show_triplets = FALSE,
  in_show_axis_title = FALSE,
  in_scales = "free_x",
  in_refLine = NULL,
  in_refAlpha = 0.5,
  in_background = NULL
)

Arguments

in_catalogue_df

Numerical data frame encoding the exchange spectra to be displayed, either a mutational catalogue V or a signatures matrix W.

in_colour_vector

Specifies the colours of the 6 nucleotide exchanges if non-null.

in_show_triplets

Whether or not to show the triplets on the x-axis

in_show_axis_title

Whether or not to show the name of the y-axis

in_scales

Argument passed on to facet_grid

in_refLine

If non-null, value on the y-axis at which a horizontal line is to be drawn

in_refAlpha

Transparency of the horizontal line if it is to be drawn

in_background

Option to provide a background theme, e.g. theme_grey

Value

The generated barplot - a ggplot2 plot

See Also

geom_bar

facet_grid

Examples

 NULL


[Package YAPSA version 1.19.0 Index]