seqDinucleotideFrequency {XNAString}R Documentation

Create set of functions and methods to calculate dinucleotide frequency in base, sugar and backbone slots

Description

Create set of functions and methods to calculate dinucleotide frequency in base, sugar and backbone slots

Usage

seqDinucleotideFrequency(unique_sets, seq, as.prob)

Arguments

unique_sets

string vector of double letters -these letters pose column names

seq

string (or character) - frequency is calculated for this string

as.prob

logical - if TRUE frequency returned as probability of occurrence

Value

numeric - named numeric vector

Examples

seqDinucleotideFrequency(c("AB", "BA", "CD"),
                                   "ABABAB",
                                    as.prob = FALSE)
seqDinucleotideFrequency(c("GC", "CG", "CC"),
                         "GCCG",
                         as.prob = FALSE)

[Package XNAString version 1.2.0 Index]