predictDuplexStructure {XNAString}R Documentation

Compute Minimum Free Energy (MFE), and a corresponding secondary structure for two dimerized RNA sequences.

Description

This function is a wrapper for RNAcofold from ViennaRNA package.

Usage

predictDuplexStructureFun(obj)

predictDuplexStructure(obj, ...)

## S4 method for signature 'XNAString'
predictDuplexStructure(obj)

Arguments

obj

XNAString object

...

optional arguments to generic function to support additional methods

Value

list (structure and mfe)

Examples

obj1 <- XNAString(
  base = "ATCG",
  sugar = "FODD",
  conjugate3 = "TAG"
)
predictDuplexStructure(obj1)

[Package XNAString version 1.2.0 Index]