predictMfeStructure {XNAString}R Documentation

Prediction of MFE structure with ViennaRNA package

Description

This function is a wrapper for RNAfold from ViennaRNA package.

Usage

predictMfeStructureFun(obj)

predictMfeStructure(obj, ...)

## S4 method for signature 'XNAString'
predictMfeStructure(obj)

Arguments

obj

XNAString object

...

optional arguments to generic function to support additional methods

Value

character, secondary structure in dot-bracket notation

Examples

obj1 <- XNAString(
  base = "ATCG",
  sugar = "FODD",
  conjugate3 = "TAG"
)
predictMfeStructure(obj1)


[Package XNAString version 1.1.2 Index]