mimir2XnaDict {XNAString}R Documentation

Reformat mimir table to XNA dictionary standards

Description

Reformat mimir table to XNA dictionary standards

Usage

mimir2XnaDict(table, base.col, sugar.col, backbone.col)

Arguments

table

data.table or data.frame (must incluse "HELM", "TS_BASE_SEQ", "TS_SUGAR_SEQ" and "TS_BACKBONE_SEQ" columns)

base.col

character (base column name)

sugar.col

character (sugar column name)

backbone.col

character (backbone column name)

Value

data.table (written in the xna_dictionary format)

Examples

dt <- data.table::data.table(HELM = c("([PPG])", "[fR]", "[srP]"),
                 TS_BASE_SEQ = c("F", NA, NA),
                 TS_SUGAR_SEQ = c(NA, NA, 'F'),
                 TS_BACKBONE_SEQ = c(NA, 'S', NA))
mimir2XnaDict(dt, 'TS_BASE_SEQ', 'TS_SUGAR_SEQ', 'TS_BACKBONE_SEQ')


[Package XNAString version 1.1.2 Index]