helm2String {XNAString} | R Documentation |
This function translates RNA molecules encoded in HELM notation into multi-string notation. It uses dictionary which links HELM code for base, sugar and backbone elements with symbols used in multi-string notation.
helm2String(helm, dictionary = xna_dictionary, remove_linker = TRUE)
helm |
string with HELM sequence, which contains one RNA polymer and optionally CHEM element |
dictionary |
data.table with following columns: "HELM", "type", "symbol". By default internal XNAString dictionary is used. |
remove_linker |
logical defines if linker should be clipped from RNA |
named list of strings with following elements: base, sugar, backbone, conjugate5, conjugate3
Marianna Plucinska
helm2String("RNA1{[dR](A)P.[dR](A)P.[dR](A)}$$$$V2.0")