mimir2XnaDict {XNAString} | R Documentation |
Reformat mimir table to XNA dictionary standards
mimir2XnaDict(table, base.col, sugar.col, backbone.col)
table |
data.table or data.frame (must incluse "HELM", "TS_BASE_SEQ", "TS_SUGAR_SEQ" and "TS_BACKBONE_SEQ" columns) |
base.col |
character (base column name) |
sugar.col |
character (sugar column name) |
backbone.col |
character (backbone column name) |
data.table (written in the xna_dictionary format)
dt <- data.table::data.table(HELM = c("([PPG])", "[fR]", "[srP]"), TS_BASE_SEQ = c("F", NA, NA), TS_SUGAR_SEQ = c(NA, NA, 'F'), TS_BACKBONE_SEQ = c(NA, 'S', NA)) mimir2XnaDict(dt, 'TS_BASE_SEQ', 'TS_SUGAR_SEQ', 'TS_BACKBONE_SEQ')