nucleosomeEnrichment.GRanges {VplotR} | R Documentation |
A function to compute nucleosome enrichment over a set of GRanges
## S3 method for class 'GRanges' nucleosomeEnrichment(x, granges, plus1_nuc_only = FALSE, verbose = TRUE, ...)
x |
GRanges, paired-end fragments |
granges |
GRanges, loci to map the fragments onto |
plus1_nuc_only |
Boolean, should compute nucleosome enrichment only for +1 nucleosome? |
verbose |
Boolean |
... |
additional parameters |
list
data(bam_test) data(ce11_proms) n <- nucleosomeEnrichment(bam_test, ce11_proms) n$fisher_test n$plot