Upset {ViSEAGO} | R Documentation |
This method allows to visualize GO terms intersections between results of enrichment tests.
Upset(object, file = "./upset.xls") ## S4 method for signature 'ANY' Upset(object, file = "./upset.xls")
object |
an |
file |
output file name (default to "./upset.xls") |
This function displays and print the intersections of enriched GO terms (p<0.01) between all results provided by enrich_GO_terms-class
or GO_clusters-class
objects. The intersections are shown in an upset plot and printed in a table.
print table and upset.
Other enrich_GO_terms:
enrich_GO_terms-class
,
overLapper()
,
show_heatmap()
,
show_table()
Other visualization:
GOclusters_heatmap()
,
GOcount()
,
GOterms_heatmap()
,
available_organisms()
,
overLapper()
,
show_heatmap()
,
show_table()
# load example object data( myGOs, package="ViSEAGO" ) # print upset ViSEAGO::Upset(myGOs)