IdiogramParams {VanillaICE}R Documentation

Constructor for IdiogramParam objects

Description

Parameters for plotting idiograms

Usage

IdiogramParams(
  seqnames = character(),
  seqlengths = numeric(),
  unit = "kb",
  genome = "hg19",
  box = list(color = "blue", lwd = 1)
)

## S4 method for signature 'IdiogramParams,ANY'
plot(x, y, ...)

Arguments

seqnames

length-one character vector providing chromosome name

seqlengths

length-one numeric vector indicating size of chromosome

unit

character string indicating unit for genomic position

genome

character string indicating genome build

box

a list of parameters for plotting the box around the part of the idiogram that is plotted

x

an IdiogramParam object

y

ignored

...

ignored

Value

IdiogramParam object


[Package VanillaICE version 1.55.0 Index]