computeLimmaDiffExpr,ToxicoSet-method {ToxicoGx} | R Documentation |
WARNING: This function can take a very long time to compute!
## S4 method for signature 'ToxicoSet' computeLimmaDiffExpr(object, buildTable = TRUE)
object |
A [‘ToxicoSet'] object with a molecular profile named ’rna' |
buildTable |
['logical'] Should the result of the eBayes function from limma be assembled into a data.table containing the result along with the gene, compound and durations names. Default it TRUE, otherwise this function with return the object produced by eBayes. |
A ['data.table'] containing the results the limma differential expression analysis comparing control vs each dose level for each compound within each duration.
if (interactive()) { data(TGGATESsmall) analysis <- computeLimmaDiffExpr(TGGATESsmall) }