dloadTargetscan {TimiRGeN} | R Documentation |
Downloads most recent version (7.2) of predicted targets from the targetscan database http://www.targetscan.org/cgi-bin/targetscan/data_download.vert72.cgi. miR-mRNA interactions from the species of interest will be extracted.
dloadTargetscan(MAE, species)
MAE |
MultiAssayExperiment which will store the downloaded targetscan data. It is recommended to use the MAE which was used in the mirMrnaInt function. |
species |
Species of interest e.g "hsa" or "mmu." |
Dataframe of species specific predicted mRNA-miR interactions. Output will be stored as an assay in the input MAE.
## Not run: MAE <- MultiAssayExperiment() MAE <-dloadTargetscan(MAE, "mmu") ## End(Not run)