setFeature<- {TarSeqQC} | R Documentation |
Set TargetExperiment slots, according to the given function call.
Set TargetExperimentList slots, according to the given function call.
setFeature(object) <- value ## S4 replacement method for signature 'TargetExperiment,character' setFeature(object) <- value setAttribute(object) <- value ## S4 replacement method for signature 'TargetExperiment,character' setAttribute(object) <- value setScanBamP(object) <- value ## S4 replacement method for signature 'TargetExperiment,ScanBamParam' setScanBamP(object) <- value setPileupP(object) <- value ## S4 replacement method for signature 'TargetExperiment,PileupParam' setPileupP(object) <- value setFeaturePanel(object) <- value ## S4 replacement method for signature 'TargetExperiment,GRanges' setFeaturePanel(object) <- value setGenePanel(object) <- value ## S4 replacement method for signature 'TargetExperiment,GRanges' setGenePanel(object) <- value setBedFile(object) <- value ## S4 replacement method for signature 'TargetExperiment,character' setBedFile(object) <- value setBamFile(object) <- value ## S4 replacement method for signature 'TargetExperiment,character' setBamFile(object) <- value setFastaFile(object) <- value ## S4 replacement method for signature 'TargetExperiment,character' setFastaFile(object) <- value ## S4 replacement method for signature 'TargetExperimentList,character' setFeature(object) <- value
object |
TargetExperiment class object. |
value |
value to set the slot. |
a TargetExperiment object
see full example in TargetExperiment-class
see full example in TargetExperimentList-class
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
## loading TargetExperiment object if (interactive()){ data(ampliPanel, package="TarSeqQC") ## Defining bam file, bed file and fasta file names and paths setBamFile(ampliPanel)<-system.file("extdata", "mybam.bam", package="TarSeqQC", mustWork=TRUE) setBedFile(ampliPanel)<-system.file("extdata", "mybed.bed", package="TarSeqQC", mustWork=TRUE) setFastaFile(ampliPanel)<-system.file("extdata", "myfasta.fa", package="TarSeqQC", mustWork=TRUE) ## Set feature slot value setFeature(ampliPanel)<-"amplicon" ## Set attribute slot value setAttribute(ampliPanel)<-"coverage" ## Set scanBamP slot value setScanBamP(ampliPanel)<-ScanBamParam() ## Set pileupP slot value setPileupP(ampliPanel)<-PileupParam() } ## loading TargetExperimentList object data(TEList, package="TarSeqQC") ## Set feature slot value setFeature(TEList)<-"amplicon"