tronco.bootstrap {TRONCO} | R Documentation |
Bootstrap a reconstructed progression model. For details and examples regarding the statistical assesment of an inferred model, we refer to the Vignette Section 7.
tronco.bootstrap( reconstruction, type = "non-parametric", nboot = 100, cores.ratio = 1, silent = FALSE )
reconstruction |
The output of tronco.capri or tronco.caprese |
type |
Parameter to define the type of sampling to be performed, e.g., non-parametric for uniform sampling. |
nboot |
Number of bootstrap sampling to be performed when estimating the model confidence. |
cores.ratio |
Percentage of cores to use coresRate * (numCores - 1) |
silent |
A parameter to disable/enable verbose messages. |
A TRONCO compliant object with reconstructed model
data(test_model) boot = tronco.bootstrap(test_model, nboot = 1, cores.ratio = 0)