tpp2dPlotQChist {TPP} | R Documentation |
Plots quality control histograms of pEC50 values of reference dataset and indicates the pEC50 values of the 2D-TPP experiment
tpp2dPlotQChist( configFile = NULL, resultTable = NULL, resultPath = NULL, trRef = NULL, fcStr = "rel_fc_", idVar = "gene_name", qualColName = "qupm" )
configFile |
data frame or system path to table that specifies important details of the 2D-TPP experiment |
resultTable |
data.frame containing the results of a CCR analysis of 2D-TPP data |
resultPath |
character string containing a valid system path to which the the qc plots will be written |
trRef |
character string with a link to a TPP-TR reference object RData file |
fcStr |
character string indicating how columns that will contain the actual fold change values are called. |
idVar |
character string indicating name of the columns containing the unique protein identifiers |
qualColName |
character string indicating which column contain protein identification quality measures |
A pdf with various quality control plots for a specified 2D-TPP data set