GetPrior {TOAST} | R Documentation |
Users can use this function to get priors provided in this package. Users can also directly specify tisuse type in MDeconv function.
GetPrior(alpha = NULL, sigma = NULL)
alpha |
A string chosen from "human pbmc","human liver", "human brain", "human pancreas", "human skin", or a nuemric vector for manually specified alpha. |
sigma |
Keep it as NULL for supported tissues. Otherwise a numeric vector for manuallly specified sigma. |
alpha_prior |
Prior knowledge for the mean of proportions. |
sigma_prior |
Prior knowledge for the sigma of proprotions. |
Ziyi Li <ziyi.li@emory.edu>
Ziyi Li, Zhenxing Guo, Ying Cheng, Peng Jin, Hao Wu. "Robust partial reference-free cell compoisiton estimation from tissue expression profiles."
GetPrior("human pbmc") GetPrior("human liver") GetPrior("human brain") GetPrior("human skin") GetPrior("human pancreas")